nf-configs/conf/pipeline/eager/mpcdf.config

// Profile config names for nf-core/configs

params {
  // Specific nf-core/configs params
  config_profile_contact = 'James Fellows Yates (@jfy133)'
  config_profile_description = 'nf-core/eager MPCDF profile provided by nf-core/configs'
}

profile {
cobra {
// Specific nf-core/eager process configuration
process {

  withName: malt {
    maxRetries = 1
    memory = 725.GB
    cpus = 40
    time = 24.h
  }
  
  withLabel:'sc_tiny'{
    cpus = { check_max( 1, 'cpus' ) }
    memory = { check_max( 1.GB * task.attempt, 'memory' ) }
    time = 24.h
  }

  withLabel:'sc_small'{
    cpus = { check_max( 1, 'cpus' ) }
    memory = { check_max( 4.GB * task.attempt, 'memory' ) }
    time = 24.h
  }

  withLabel:'sc_medium'{
    cpus = { check_max( 1, 'cpus' ) }
    memory = { check_max( 8.GB * task.attempt, 'memory' ) }
    time = 24.h
  }

  withLabel:'mc_small'{
    cpus = { check_max( 2 * task.attempt, 'cpus' ) }
    memory = { check_max( 4.GB * task.attempt, 'memory' ) }
    time = 24.h
  }

  withLabel:'mc_medium' {
    cpus = { check_max( 4 * task.attempt, 'cpus' ) }
    memory = { check_max( 8.GB * task.attempt, 'memory' ) }
    time = 24.h
  }

  withLabel:'mc_large'{
     cpus = { check_max( 8 * task.attempt, 'cpus' ) }
     memory = { check_max( 16.GB * task.attempt, 'memory' ) }
     time = 24.h
  }

  withLabel:'mc_huge'{
     cpus = { check_max( 32 * task.attempt, 'cpus' ) }
     memory = { check_max( 256.GB * task.attempt, 'memory' ) }
     time = 24.h
   }
  }
  }
}