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nf-configs/conf/pipeline/raredisease/hasta.config

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process {
withName:'PICARD_MARKDUPLICATES' {
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memory = { check_max( 90.GB * task.attempt, 'memory' ) }
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}
withName:'DEEPVARIANT' {
cpus = { check_max( 16 * task.attempt, 'cpus' ) }
memory = { check_max( 80.GB * task.attempt, 'memory' ) }
}
withName:'QUALIMAP_BAMQC' {
ext.args = { "--java-mem-size=${task.memory.giga / 1.15 as long}G" }
}
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}