mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-25 01:19:54 +00:00
18 lines
637 B
Markdown
18 lines
637 B
Markdown
|
# nf-core/configs: CRUK-MI sarek specific configuration
|
||
|
|
|
||
|
|
Extra specific configuration for sarek pipeline
|
||
|
|
|
||
|
|
## Usage
|
||
|
|
|
||
|
|
To use, run the pipeline with `-profile crukmi`.
|
||
|
|
|
||
|
|
This will download and launch the sarek specific [`crukmi.config`](../../../conf/pipeline/sarek/munin.config) which has been pre-configured with a setup suitable for the Cancer Research UK Manchester Institute cluster (phoenix).
|
||
|
|
|
||
|
|
Example: `nextflow run nf-core/sarek -profile crukmi`
|
||
|
|
|
||
|
|
## Sarek specific configurations for CRUK-MI
|
||
|
|
|
||
|
|
Specific configurations for `CRUK-MI` has been made for sarek.
|
||
|
|
|
||
|
|
- Initial requested resources for SAMTOOLS_MPILEUP are only 5GB and 1 core.
|