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17 lines
937 B
Markdown
17 lines
937 B
Markdown
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# nf-core/configs: CCGA Med Cluster Configuration
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Deployment and testing of nf-core pipelines at the CCGA Med cluster is on-going.
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To use, run the pipeline with `-profile ccga_med`. This will download and launch the [`ccga_med.config`](../conf/ccga_med.config) which has been pre-configured with a setup suitable for the CCGA cluster. Using this profile, a docker image containing all of the required software will be downloaded, and converted to a Singularity image before execution of the pipeline.
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Before running the pipeline you will need to load Nextflow and Singularity using the environment module system on the cluster. You can do this by issuing the commands below:
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```bash
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## Load Nextflow and Singularity environment modules
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module purge
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module load nextflow
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module load singularity
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```
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>NB: Access to the CCGA Med cluster is restricted to IKMB/CCGA employees. Please talk to Marc Hoeppner to get access (@marchoeppner).
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