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30 lines
801 B
Text
30 lines
801 B
Text
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//Profile config names for nf-core/configs
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params {
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config_profile_description = 'Northwestern University Quest HPC (Genomics Nodes) config provided by nf-core/configs'
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config_profile_contact = 'Rogan Grant / Janna Nugent (@RoganGrant, @NUjon)'
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config_profile_url = 'https://www.it.northwestern.edu/research/user-services/quest/'
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}
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singularity {
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enabled = true
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autoMounts = true
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queue = {task.time < 48.h ? 'genomics' : 'genomicslong'}
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clusterOptions = '-A b1042'
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cacheDir = "/projects/b1042/singularity_cache"
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}
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process {
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beforeScript = 'module load singularity/latest graphviz/2.40.1'
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executor = 'slurm'
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}
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executor {
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submitRateLimit = '1sec'
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}
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params {
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max_memory = 190.GB
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max_cpus = 40
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max_time = 240.h
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igenomes_base = "/projects/genomicsshare/igenomes" #pending
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}
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