millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-11 04:23:10 +00:00
Code Issues Releases Packages Activity

Merge pull request #89 from MaxUlysse/AWSBATCH

Browse source 
Fix issues with awsbatch profile
This commit is contained in:
Alexander Peltzer 2019-11-26 11:23:15 +01:00 committed by GitHub
commit 00db62416f
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 5 additions and 3 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

8
conf/awsbatch.config
View file

@ -1,14 +1,16 @@
//Nextflow config file for running on AWS batch //Nextflow config file for running on AWS batch
params { params {
config_profile_name = 'AWSBATCH' awsqueue = false
config_profile_description = 'AWSBATCH Cloud Profile' awsregion = 'eu-west-1'
config_profile_contact = 'Alexander Peltzer (@apeltzer)' config_profile_contact = 'Alexander Peltzer (@apeltzer)'
config_profile_description = 'AWSBATCH Cloud Profile'
config_profile_name = 'AWSBATCH'
config_profile_url = 'https://aws.amazon.com/batch/' config_profile_url = 'https://aws.amazon.com/batch/'
tracedir = './'
} }
aws.region = params.awsregion aws.region = params.awsregion
process.executor = 'awsbatch' process.executor = 'awsbatch'
process.queue = params.awsqueue process.queue = params.awsqueue
executor.awscli = '/home/ec2-user/miniconda/bin/aws' executor.awscli = '/home/ec2-user/miniconda/bin/aws'
params.tracedir = './'