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point travis to local clone
Previously travis tests could only succeed if the config was already present in the master branch, but for newly added configs it would always fail. This commit sets custom_config_base to the local clone of the PR branch on the Travis VM where the file is present.
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@ -27,4 +27,4 @@ script:
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tr -s ' ' | \
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cut -d " " -f 2 | \
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grep -v "czbiohub_aws" | \
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xargs -I {} nextflow run ${TRAVIS_BUILD_DIR}/configtest.nf -profile {}
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xargs -I {} nextflow run ${TRAVIS_BUILD_DIR}/configtest.nf --custom_config_base=${TRAVIS_BUILD_DIR} -profile {}
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