From 0501ae4c1a1f7c7d3421d3bf7075de75d9f3bfce Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Thu, 3 Sep 2020 20:21:49 +0200 Subject: [PATCH] Started docs for mpcdf --- docs/mpcdf.md | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) create mode 100644 docs/mpcdf.md diff --git a/docs/mpcdf.md b/docs/mpcdf.md new file mode 100644 index 0000000..11d4474 --- /dev/null +++ b/docs/mpcdf.md @@ -0,0 +1,22 @@ +# nf-core/configs: MPCDF Configuration + +All nf-core pipelines have been successfully configured for use on the HPCs at [Max Planck Computing and Data Facility](https://www.mpcdf.mpg.de/). + +> :warning: these profiles are not officially supported by the MPCDF. + +To run Nextflow, the `jdk` module must be loaded. To use the nf-core profile(s), run the pipeline with `-profile ,mpcdf`. + +Currently the following clusters are supported: cobra, draco* (* coming soon) + +>NB: Nextflow will need to submit the jobs via SLURM to the clusters and as such the commands above will have to be executed on one of the head nodes. Check the [MPCDF documentation](https://www.mpcdf.mpg.de/services/computing). + +# cobra + +Cobra does not currently support singularity, therefore the anaconda/module should be loaded for use. + +Due to this, we also recommend setting the `$NXF_CONDA_CACHEDIR` to a location of your choice to store all environments (so to prevent nextflow building the environment on every run). + +To use: `-profile cobra,mpcdf` + +# draco +