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Removed Conda, added automount Singularity

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ameyner2 2021-03-18 12:31:56 +00:00
parent d4cd07c646
commit 059d353a1e
1 changed files with 4 additions and 3 deletions
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5
conf/eddie.config
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@ -23,8 +23,6 @@ process {
beforeScript = beforeScript =
""" """
. /etc/profile.d/modules.sh . /etc/profile.d/modules.sh
sleep 2
module load 'anaconda/5.3.1'
module load 'roslin/singularity/3.5.3' module load 'roslin/singularity/3.5.3'
export SINGULARITY_TMPDIR="\$TMPDIR" export SINGULARITY_TMPDIR="\$TMPDIR"
""" """
@ -46,4 +44,7 @@ env {
singularity { singularity {
envWhitelist = "SINGULARITY_TMPDIR" envWhitelist = "SINGULARITY_TMPDIR"
runOptions = '-p' runOptions = '-p'
enabled = true
autoMounts = true
} }