millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-22 08:29:54 +00:00
Code Issues Releases Packages Activity

Removed Conda, added automount Singularity

Browse source
This commit is contained in:
ameyner2 2021-03-18 12:31:56 +00:00
parent d4cd07c646
commit 059d353a1e
1 changed files with 4 additions and 3 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

7
conf/eddie.config
View file

@ -23,8 +23,6 @@ process {
beforeScript = beforeScript =
""" """
. /etc/profile.d/modules.sh . /etc/profile.d/modules.sh
sleep 2
module load 'anaconda/5.3.1'
module load 'roslin/singularity/3.5.3' module load 'roslin/singularity/3.5.3'
export SINGULARITY_TMPDIR="\$TMPDIR" export SINGULARITY_TMPDIR="\$TMPDIR"
""" """
@ -46,4 +44,7 @@ env {
singularity { singularity {
envWhitelist = "SINGULARITY_TMPDIR" envWhitelist = "SINGULARITY_TMPDIR"
runOptions = '-p' runOptions = '-p'
} enabled = true
autoMounts = true
}