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Update eva.config

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James A. Fellows Yates 2022-06-03 21:08:19 +02:00 committed by GitHub
parent 9ef52af084
commit 05cc8a08f1
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1 changed files with 2 additions and 1 deletions
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conf/pipeline/eager/eva.config
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@ -193,7 +193,7 @@ process {
cache = false cache = false
clusterOptions = { "-S /bin/bash -V -l h=!(bionode06)" } clusterOptions = { "-S /bin/bash -V -l h=!(bionode06)" }
beforeScript = 'export JAVA_TOOL_OPTIONS="-XX:ParallelGCThreads=1"; export OPENBLAS_NUM_THREADS=1; export OMP_NUM_THREADS=1' beforeScript = 'export JAVA_TOOL_OPTIONS="-XX:ParallelGCThreads=1"; export OPENBLAS_NUM_THREADS=1; export OMP_NUM_THREADS=1'
clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toMega() * 4)}M" } clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toMega() * 8)}M" }
errorStrategy = { task.exitStatus in [1,143,137,104,134,139,140] ? 'retry' : 'finish' } errorStrategy = { task.exitStatus in [1,143,137,104,134,139,140] ? 'retry' : 'finish' }
} }
@ -207,6 +207,7 @@ process {
withName:multiqc { withName:multiqc {
beforeScript = 'export OPENBLAS_NUM_THREADS=1; export OMP_NUM_THREADS=1;' beforeScript = 'export OPENBLAS_NUM_THREADS=1; export OMP_NUM_THREADS=1;'
clusterOptions = { "-S /bin/bash -V -j y -o output.log -l h_vmem=${task.memory.toGiga()}G" }
} }
} }