millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-22 00:26:03 +00:00
Code Issues Releases Packages Activity

Update mpcdf.config

Browse source
This commit is contained in:
James A. Fellows Yates 2020-10-15 14:22:35 +02:00 committed by GitHub
parent 11f1fb71db
commit 05deeca2d6
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 25 additions and 2 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

27
conf/mpcdf.config
View file

@ -9,7 +9,7 @@ profiles {
cobra { cobra {
// Does not have singularity! Conda module must be used, but it is // Does not have singularity! Conda module must be used, but it is
// recommended to set NXF_CONDA_CACHEDIR var in ~/.bash{_profile,rc} // recommended to set NXF_CONDA_CACHEDIR var in ~/.bash{_profile,rc}
// To create common cache dir (only until /u/ periodically cleared!) // To create common cache dir
process { process {
beforeScript = 'module load anaconda/3/2020.02' beforeScript = 'module load anaconda/3/2020.02'
@ -21,10 +21,33 @@ profiles {
} }
params { params {
config_profile_description = 'MPCDF cobra profile provided by nf-core/configs.' config_profile_description = 'MPCDF cobra profile (unofficially) provided by nf-core/configs.'
max_memory = 725.GB max_memory = 725.GB
max_cpus = 80 max_cpus = 80
max_time = 24.h max_time = 24.h
} }
} }
raven {
// Does not have singularity! Conda module must be used, but it is
// recommended to set NXF_CONDA_CACHEDIR var in ~/.bash{_profile,rc}
// to create common cache dir
process {
beforeScript = 'module load anaconda/3/2020.02'
executor = 'slurm'
}
executor {
queueSize = 8
}
params {
config_profile_description = 'MPCDF raven profile (unofficially) provided by nf-core/configs.'
max_memory = 368.GB
max_cpus = 192
max_time = 24.h
}
}
} }