From 9747d5fe15adb8a0f9d8e9c6e88c06f97eccb957 Mon Sep 17 00:00:00 2001
From: Praveen Raj S <43108054+praveenraj2018@users.noreply.github.com>
Date: Wed, 16 Mar 2022 14:36:25 +0100
Subject: [PATCH 1/2] Added PileupSummariesForMutect2 in CPU limit list

Add PileupSummariesForMutect2 to the list to run with less threads.
Changed the MaxForks to 12
Tested on an internal sample and it worked!
---
 conf/munin.config | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/conf/munin.config b/conf/munin.config
index 4f9c209..34d36ae 100644
--- a/conf/munin.config
+++ b/conf/munin.config
@@ -20,9 +20,10 @@ process {
   maxForks = 46
 
 // Limit cpus for Mutect2
-  withName:'Mutect2|Mutect2Single' {
+process {
+  withName:'Mutect2|Mutect2Single|PileupSummariesForMutect2' {
     time = {48.h * task.attempt}
-    maxForks = 23
+    maxForks = 12
   }
 }
 

From 1d4f254e435dac46917e0e96460cbaffdfd95bc2 Mon Sep 17 00:00:00 2001
From: Praveen Raj S <43108054+praveenraj2018@users.noreply.github.com>
Date: Wed, 16 Mar 2022 14:37:28 +0100
Subject: [PATCH 2/2] Update munin.config

---
 conf/munin.config | 1 -
 1 file changed, 1 deletion(-)

diff --git a/conf/munin.config b/conf/munin.config
index 34d36ae..5f794d6 100644
--- a/conf/munin.config
+++ b/conf/munin.config
@@ -20,7 +20,6 @@ process {
   maxForks = 46
 
 // Limit cpus for Mutect2
-process {
   withName:'Mutect2|Mutect2Single|PileupSummariesForMutect2' {
     time = {48.h * task.attempt}
     maxForks = 12