From 089b5b8e3bbab55484e41d0e5a450d7233d874e9 Mon Sep 17 00:00:00 2001 From: drpatelh Date: Thu, 12 Dec 2019 13:44:37 +0000 Subject: [PATCH] Update config --- conf/awsbatch.config | 30 ++++++++++++++++-------------- 1 file changed, 16 insertions(+), 14 deletions(-) diff --git a/conf/awsbatch.config b/conf/awsbatch.config index 63e0dab..2e5f83c 100644 --- a/conf/awsbatch.config +++ b/conf/awsbatch.config @@ -1,14 +1,16 @@ -//Nextflow config file for running on AWS batch - -params { - config_profile_description = 'AWSBATCH Cloud Profile' - config_profile_contact = 'Alexander Peltzer (@apeltzer)' - config_profile_url = 'https://aws.amazon.com/de/batch/' - - tracedir = './' -} - -process.executor = 'awsbatch' -process.queue = params.awsqueue -aws.region = params.awsregion -executor.awscli = params.awscli +//Nextflow config file for running on AWS batch +params { + config_profile_description = 'AWSBATCH Cloud Profile' + config_profile_contact = 'Alexander Peltzer (@apeltzer)' + config_profile_url = 'https://aws.amazon.com/batch/' + + awsqueue = false + awsregion = 'eu-west-1' + awscli = '/home/ec2-user/miniconda/bin/aws' + tracedir = './' +} + +process.executor = 'awsbatch' +process.queue = params.awsqueue +aws.region = params.awsregion +executor.awscli = params.awscli