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Add new microbiome_screening profile to docs

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James A. Fellows Yates 2020-08-11 09:20:31 +02:00 committed by GitHub
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docs/pipeline/eager/shh.md
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@ -20,6 +20,10 @@ Specific configurations for shh has been made for eager.
### Contextual profiles ### Contextual profiles
#### Microbiome Sciences
* `microbiome_screening` runs MALT straight to supercruncher (with no retries!) and full resources requested due to microbiome screening databases often easily reach this size
#### Human Pop-Gen #### Human Pop-Gen
* `human`: optimised for mapping of human aDNA reads (i.e. bwa aln defaults as `-l 16500, -n 0.01`) * `human`: optimised for mapping of human aDNA reads (i.e. bwa aln defaults as `-l 16500, -n 0.01`)