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Update conf/pipeline/sarek/uppmax.config

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Maxime Garcia 2020-02-27 17:02:31 +01:00 committed by GitHub
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conf/pipeline/sarek/uppmax.config
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@ -4,7 +4,7 @@ params {
config_profile_contact = 'Maxime Garcia (@MaxUlysse)' config_profile_contact = 'Maxime Garcia (@MaxUlysse)'
config_profile_description = 'nf-core/sarek uppmax profile provided by nf-core/configs' config_profile_description = 'nf-core/sarek uppmax profile provided by nf-core/configs'
singleCPUmem = 7.GB singleCPUmem = 7.GB
// Just useful until iGenomes is updated on UPPMAX // Just useful until iGenomes is updated on UPPMAX
igenomeIgnore = true igenomeIgnore = true
genomes_base = params.genome == 'GRCh37' ? '/sw/data/uppnex/ToolBox/ReferenceAssemblies/hg38make/bundle/2.8/b37' : '/sw/data/uppnex/ToolBox/hg38bundle' genomes_base = params.genome == 'GRCh37' ? '/sw/data/uppnex/ToolBox/ReferenceAssemblies/hg38make/bundle/2.8/b37' : '/sw/data/uppnex/ToolBox/hg38bundle'