millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-21 16:16:04 +00:00
Code Issues Releases Packages Activity

Merge pull request #157 from nf-core/bi-docs

Browse source 
Add BI to main readme.md
This commit is contained in:
Alexander Peltzer 2020-05-28 10:25:19 +02:00 committed by GitHub
commit 0d5899eb26
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
2 changed files with 10 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

1
README.md
View file

@ -96,6 +96,7 @@ Currently documentation is available for the following systems:
* [AWSBATCH](docs/awsbatch.md) * [AWSBATCH](docs/awsbatch.md)
* [BIGPURPLE](docs/bigpurple.md) * [BIGPURPLE](docs/bigpurple.md)
* [BI](docs/bi.md)
* [BINAC](docs/binac.md) * [BINAC](docs/binac.md)
* [CBE](docs/cbe.md) * [CBE](docs/cbe.md)
* [CCGA_DX](docs/ccga_dx.md) * [CCGA_DX](docs/ccga_dx.md)

9
docs/bi.md Normal file
View file

@ -0,0 +1,9 @@
# nf-core/configs: BI Configuration
All nf-core pipelines have been successfully configured for use at Boehringer Ingelheim.
To use, run the pipeline with `-profile bi`. This will download and launch the [`bi.config`](../conf/bi.config) which has been pre-configured with a setup suitable for the BI systems. Using this profile, a docker image containing all of the required software will be downloaded, and converted to a Singularity image before execution of the pipeline.
Before running the pipeline you will need to follow the internal documentation to run Nextflow on our systems. Similar to that, you need to set an environment variable `NXF_GLOBAL_CONFIG` to the path of the internal global config which is not publicly available here.
>NB: Nextflow will need to submit the jobs via the job scheduler to the HPC cluster and as such the commands above will have to be executed on one of the login nodes. If in doubt contact IT.