From 0e3898eabff95652d76ce297a0d1d7ba24c413c6 Mon Sep 17 00:00:00 2001 From: ikeller Date: Thu, 20 May 2021 10:53:35 +0200 Subject: [PATCH] modify singularity settings --- conf/unibe_ibu.config | 12 +++++++----- 1 file changed, 7 insertions(+), 5 deletions(-) diff --git a/conf/unibe_ibu.config b/conf/unibe_ibu.config index cda6ace..fa6cf97 100644 --- a/conf/unibe_ibu.config +++ b/conf/unibe_ibu.config @@ -1,5 +1,7 @@ +singularity.autoMounts = true + params { - config_profile_description = "University of Bern, Interfaculty Bioinformatics Unit cluster profile" + config_profile_description = "University of Bern, Interfaculty Bioinformatics Unit cluster profile" config_profile_contact = "irene.keller@dbmr.unibe.ch; info@bioinformatics.unibe.ch" config_profile_url = "https://www.bioinformatics.unibe.ch/" max_memory = 500.GB @@ -8,16 +10,16 @@ params { } process { - executor = "slurm" + executor = "slurm" maxRetries = 2 beforeScript = 'mkdir -p ./tmp/ && export TMPDIR=./tmp/' } executor { - queueSize = 30 + queueSize = 30 } singularity { - enable = true - autoMounts = true + docker.enabled = false + singularity.enabled = true } \ No newline at end of file