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@ -24,7 +24,7 @@ Before running a pipeline you will need to load Java, Miniconda, Singularity and
```bash
## Load Java and Nextflow environment modules
module purge
module load jdk/1.8.0_291 miniconda/4.9.2 singularity/3.8.0 nextflow/21.04.1.5556
module load jdk/1.8.0_291 miniconda singularity/3.8.0 nextflow/21.04.1.5556
```
All of the intermediate output files required to run the pipeline will be stored in the `work/` directory. It is recommended to delete this directory after the pipeline has finished successfully because it can get quite large, and all of the main output files will be saved in the `results/` directory anyway.