From 1565b2ce6387f7da71ea48dc4ef94ea09dbf6cf1 Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Tue, 15 Mar 2022 07:42:23 +0100 Subject: [PATCH] Update eva.config --- conf/pipeline/eager/eva.config | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/conf/pipeline/eager/eva.config b/conf/pipeline/eager/eva.config index 29feafc..95ceb33 100644 --- a/conf/pipeline/eager/eva.config +++ b/conf/pipeline/eager/eva.config @@ -76,19 +76,19 @@ process { } withName: bwa { - clusterOptions = { "-S /bin/bash -V -l h_vmem=${task.memory},h=!(bionode01|bionode02|bionode03|bionode04|bionode05|bionode06)" } + clusterOptions = { "-S /bin/bash -V -l h_vmem=${task.memory.toGiga()}G,h=!(bionode01|bionode02|bionode03|bionode04|bionode05|bionode06)" } } withName: bwamem { - clusterOptions = { "-S /bin/bash -V -l h_vmem=${task.memory},h=!(bionode01|bionode02|bionode03|bionode04|bionode05|bionode06)" } + clusterOptions = { "-S /bin/bash -V -l h_vmem=${task.memory.toGiga()}G,h=!(bionode01|bionode02|bionode03|bionode04|bionode05|bionode06)" } } withName: circularmapper { - clusterOptions = { "-S /bin/bash -V -l h_vmem=${task.memory},h=!(bionode01|bionode02|bionode03|bionode04|bionode05|bionode06)" } + clusterOptions = { "-S /bin/bash -V -l h_vmem=${task.memory.toGiga()}G,h=!(bionode01|bionode02|bionode03|bionode04|bionode05|bionode06)" } } withName: bowtie2 { - clusterOptions = { "-S /bin/bash -V -l h_vmem=${task.memory},h=!(bionode01|bionode02|bionode03|bionode04|bionode05|bionode06)" } + clusterOptions = { "-S /bin/bash -V -l h_vmem=${task.memory.toGiga()}G,h=!(bionode01|bionode02|bionode03|bionode04|bionode05|bionode06)" } } withName: samtools_flagstat {