From 17c3767fef85f129eee9632ee6202822ad550ba8 Mon Sep 17 00:00:00 2001
From: Simon Pearce <24893913+SPPearce@users.noreply.github.com>
Date: Fri, 23 Sep 2022 12:53:54 +0100
Subject: [PATCH] Update crukmi.config

Fix the singularity cache dir and add process_single.
---
 conf/crukmi.config | 10 ++++++----
 1 file changed, 6 insertions(+), 4 deletions(-)

diff --git a/conf/crukmi.config b/conf/crukmi.config
index 4823585..778935b 100644
--- a/conf/crukmi.config
+++ b/conf/crukmi.config
@@ -5,11 +5,8 @@ params {
   config_profile_url = 'http://scicom.picr.man.ac.uk/projects/user-support/wiki'
 }
 
-env {
-    SINGULARITY_CACHEDIR = '/lmod/nextflow_software'
-}
-
 singularity {
+  cacheDir = '/lmod/nextflow_software'
   enabled = true
   autoMounts = true
 }
@@ -22,6 +19,11 @@ process {
   maxErrors = '-1'
   maxRetries = 3
 
+  withLabel:process_single {
+    cpus = { check_max( 1 * task.attempt, 'cpus' ) }
+    memory = { check_max( 5.GB * task.attempt, 'memory' ) }
+  }
+
   withLabel:process_low {
     cpus = { check_max( 1 * task.attempt, 'cpus' ) }
     memory = { check_max( 5.GB * task.attempt, 'memory' ) }