millironx/nf-configs
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Update crukmi.config

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Fix the singularity cache dir and add process_single.
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Simon Pearce 2022-09-23 12:53:54 +01:00 committed by GitHub
parent 0d4ecaeb6d
commit 17c3767fef
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1 changed files with 6 additions and 4 deletions
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conf/crukmi.config
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@ -5,11 +5,8 @@ params {
config_profile_url = 'http://scicom.picr.man.ac.uk/projects/user-support/wiki' config_profile_url = 'http://scicom.picr.man.ac.uk/projects/user-support/wiki'
} }
env {
SINGULARITY_CACHEDIR = '/lmod/nextflow_software'
}
singularity { singularity {
cacheDir = '/lmod/nextflow_software'
enabled = true enabled = true
autoMounts = true autoMounts = true
} }
@ -22,6 +19,11 @@ process {
maxErrors = '-1' maxErrors = '-1'
maxRetries = 3 maxRetries = 3
withLabel:process_single {
cpus = { check_max( 1 * task.attempt, 'cpus' ) }
memory = { check_max( 5.GB * task.attempt, 'memory' ) }
}
withLabel:process_low { withLabel:process_low {
cpus = { check_max( 1 * task.attempt, 'cpus' ) } cpus = { check_max( 1 * task.attempt, 'cpus' ) }
memory = { check_max( 5.GB * task.attempt, 'memory' ) } memory = { check_max( 5.GB * task.attempt, 'memory' ) }