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update singularity command
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@ -8,7 +8,7 @@ params {
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}
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process {
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process {
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beforeScript = 'alias singularity /varidata/research/software/singularity/singularity-ce-3.8.2/bin/singularity'
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beforeScript = 'alias singularity=/varidata/research/software/singularity/singularity-ce-3.8.2/bin/singularity'
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executor = 'pbs'
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executor = 'pbs'
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queue = { task.time <= 48.h ? 'shortq' : 'longq' }
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queue = { task.time <= 48.h ? 'shortq' : 'longq' }
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maxRetries = 2
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maxRetries = 2
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