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Merge pull request #3 from ilight1542/mpcdf_eager_config_update

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modified mpcdf configs (general + eager)
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James A. Fellows Yates 2022-03-03 14:25:58 +01:00 committed by GitHub
commit 18890fc3cf
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2 changed files with 56 additions and 1 deletions
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2
conf/mpcdf.config
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@ -47,7 +47,7 @@ profiles {
}
executor {
queueSize = 8
queueSize = 30
pollInterval = '1 min'
queueStatInterval = '5 min'
}

55
conf/pipeline/eager/mpcdf.config
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@ -61,4 +61,59 @@ process {
}
}
}
raven {
// Specific nf-core/eager process configuration
process {
withName: malt {
maxRetries = 1
memory = 2048.GB
cpus = 72
time = 24.h
}
withLabel:'sc_tiny'{
cpus = { check_max( 1, 'cpus' ) }
memory = { check_max( 1.GB * task.attempt, 'memory' ) }
time = 24.h
}
withLabel:'sc_small'{
cpus = { check_max( 1, 'cpus' ) }
memory = { check_max( 4.GB * task.attempt, 'memory' ) }
time = 24.h
}
withLabel:'sc_medium'{
cpus = { check_max( 1, 'cpus' ) }
memory = { check_max( 8.GB * task.attempt, 'memory' ) }
time = 24.h
}
withLabel:'mc_small'{
cpus = { check_max( 2 * task.attempt, 'cpus' ) }
memory = { check_max( 4.GB * task.attempt, 'memory' ) }
time = 24.h
}
withLabel:'mc_medium' {
cpus = { check_max( 4 * task.attempt, 'cpus' ) }
memory = { check_max( 8.GB * task.attempt, 'memory' ) }
time = 24.h
}
withLabel:'mc_large'{
cpus = { check_max( 8 * task.attempt, 'cpus' ) }
memory = { check_max( 16.GB * task.attempt, 'memory' ) }
time = 24.h
}
withLabel:'mc_huge'{
cpus = { check_max( 72, 'cpus' ) }
memory = { check_max( 240.GB * task.attempt, 'memory' ) }
time = 24.h
}
}
}
}