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add gis.md documentation

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ajodeh-juma 2022-03-16 16:17:54 +03:00
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docs/gis.md
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@ -26,7 +26,7 @@ set -u
# Run a downloaded/git-cloned nextflow workflow from # Run a downloaded/git-cloned nextflow workflow from
nextflow run \\ nextflow run \\
nf-core/workflow \\ nf-core/workflow \\
-resume -resume \\
-profile gis \\ -profile gis \\
--email my-email@example.org \\ --email my-email@example.org \\
-c my-specific.config -c my-specific.config
@ -40,6 +40,6 @@ nextflow run nf-core/rnaseq ...
## Databanks ## Databanks
A local copy of several genomes are available in `/mnt/projects/rpd/genomes.testing/S3_igenomes/` directory. A local copy of several genomes are available in `/mnt/projects/rpd/genomes.testing/S3_igenomes/` directory.
>NB: You will need an account to use the HPC cluster on GIS in order to run the pipeline. If in doubt contact IT or go to [Andreas Wilm](https://github.com/andreas-wilm) >NB: You will need an account to use the HPC cluster on GIS in order to run the pipeline. If in doubt contact IT or go to [Andreas Wilm](https://github.com/andreas-wilm)