deprecate igenomesIgnore in favor of igenomes_ignore

keep both for now until all the pipelines have been synced
5 years ago · 18ed48f398
parent 8e5cc7838c
commit 18ed48f398
6 changed files with 12 additions and 6 deletions
--- a/conf/cbe.config
+++ b/conf/cbe.config
@ -18,5 +18,6 @@ params {
  params.max_time = 14.d
  params.max_cpus = 36
  params.max_memory = 4.TB
-  igenomesIgnore = true
+  igenomes_ignore = true
+  igenomesIgnore = true //deprecated
 }
--- a/conf/czbiohub_aws.config
+++ b/conf/czbiohub_aws.config
@ -55,7 +55,8 @@ params {
  awsregion = "us-west-2"
  awsqueue = "nextflow"

-  igenomesIgnore = true
+  igenomes_ignore = true
+  igenomesIgnore = true //deprecated

  fc_extra_attributes = 'gene_name'
  fc_group_features = 'gene_id'
--- a/conf/genouest.config
+++ b/conf/genouest.config
@ -16,7 +16,8 @@ process {
 }

 params {
-  igenomesIgnore = true
+  igenomes_ignore = true
+  igenomesIgnore = true //deprecated
  max_memory = 750.GB
  max_cpus = 80
  max_time = 336.h
--- a/conf/hebbe.config
+++ b/conf/hebbe.config
@ -18,7 +18,8 @@ process {
 }

 params {
-  igenomesIgnore = true
+  igenomes_ignore = true
+  igenomesIgnore = true //deprecated
  saveReference = true
  max_memory = 64.GB
  max_cpus = 20
--- a/conf/mendel.config
+++ b/conf/mendel.config
@ -19,5 +19,6 @@ params {
  max_cpus = 32
  max_memory = 128.GB
  max_time = 192.h
-  igenomesIgnore = true
+  igenomes_ignore = true
+  igenomesIgnore = true //deprecated
 }
--- a/conf/pasteur.config
+++ b/conf/pasteur.config
@ -16,7 +16,8 @@ process {
 }

 params {
-  igenomesIgnore = true
+  igenomes_ignore = true
+  igenomesIgnore = true //deprecated
  max_memory = 256.GB
  max_cpus = 28
  max_time = 24.h