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https://github.com/MillironX/nf-configs.git
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deprecate igenomesIgnore in favor of igenomes_ignore
keep both for now until all the pipelines have been synced
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parent
8e5cc7838c
commit
18ed48f398
6 changed files with 12 additions and 6 deletions
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@ -18,5 +18,6 @@ params {
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params.max_time = 14.d
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params.max_time = 14.d
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params.max_cpus = 36
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params.max_cpus = 36
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params.max_memory = 4.TB
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params.max_memory = 4.TB
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igenomesIgnore = true
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igenomes_ignore = true
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igenomesIgnore = true //deprecated
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}
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}
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@ -55,7 +55,8 @@ params {
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awsregion = "us-west-2"
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awsregion = "us-west-2"
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awsqueue = "nextflow"
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awsqueue = "nextflow"
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igenomesIgnore = true
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igenomes_ignore = true
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igenomesIgnore = true //deprecated
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fc_extra_attributes = 'gene_name'
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fc_extra_attributes = 'gene_name'
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fc_group_features = 'gene_id'
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fc_group_features = 'gene_id'
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@ -16,7 +16,8 @@ process {
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}
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}
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params {
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params {
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igenomesIgnore = true
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igenomes_ignore = true
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igenomesIgnore = true //deprecated
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max_memory = 750.GB
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max_memory = 750.GB
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max_cpus = 80
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max_cpus = 80
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max_time = 336.h
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max_time = 336.h
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@ -18,7 +18,8 @@ process {
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}
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}
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params {
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params {
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igenomesIgnore = true
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igenomes_ignore = true
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igenomesIgnore = true //deprecated
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saveReference = true
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saveReference = true
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max_memory = 64.GB
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max_memory = 64.GB
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max_cpus = 20
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max_cpus = 20
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@ -19,5 +19,6 @@ params {
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max_cpus = 32
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max_cpus = 32
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max_memory = 128.GB
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max_memory = 128.GB
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max_time = 192.h
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max_time = 192.h
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igenomesIgnore = true
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igenomes_ignore = true
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igenomesIgnore = true //deprecated
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}
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}
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@ -16,7 +16,8 @@ process {
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}
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}
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params {
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params {
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igenomesIgnore = true
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igenomes_ignore = true
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igenomesIgnore = true //deprecated
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max_memory = 256.GB
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max_memory = 256.GB
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max_cpus = 28
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max_cpus = 28
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max_time = 24.h
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max_time = 24.h
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