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deprecate igenomesIgnore in favor of igenomes_ignore

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keep both for now until all the pipelines have been synced
This commit is contained in:
phue 2019-10-28 11:38:24 +01:00
parent 8e5cc7838c
commit 18ed48f398
6 changed files with 12 additions and 6 deletions
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3
conf/cbe.config
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@ -18,5 +18,6 @@ params {
params.max_time = 14.d params.max_time = 14.d
params.max_cpus = 36 params.max_cpus = 36
params.max_memory = 4.TB params.max_memory = 4.TB
igenomesIgnore = true igenomes_ignore = true
igenomesIgnore = true //deprecated
} }

3
conf/czbiohub_aws.config
View file

@ -55,7 +55,8 @@ params {
awsregion = "us-west-2" awsregion = "us-west-2"
awsqueue = "nextflow" awsqueue = "nextflow"
igenomesIgnore = true igenomes_ignore = true
igenomesIgnore = true //deprecated
fc_extra_attributes = 'gene_name' fc_extra_attributes = 'gene_name'
fc_group_features = 'gene_id' fc_group_features = 'gene_id'

3
conf/genouest.config
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@ -16,7 +16,8 @@ process {
} }
params { params {
igenomesIgnore = true igenomes_ignore = true
igenomesIgnore = true //deprecated
max_memory = 750.GB max_memory = 750.GB
max_cpus = 80 max_cpus = 80
max_time = 336.h max_time = 336.h

3
conf/hebbe.config
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@ -18,7 +18,8 @@ process {
} }
params { params {
igenomesIgnore = true igenomes_ignore = true
igenomesIgnore = true //deprecated
saveReference = true saveReference = true
max_memory = 64.GB max_memory = 64.GB
max_cpus = 20 max_cpus = 20

3
conf/mendel.config
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@ -19,5 +19,6 @@ params {
max_cpus = 32 max_cpus = 32
max_memory = 128.GB max_memory = 128.GB
max_time = 192.h max_time = 192.h
igenomesIgnore = true igenomes_ignore = true
igenomesIgnore = true //deprecated
} }

3
conf/pasteur.config
View file

@ -16,7 +16,8 @@ process {
} }
params { params {
igenomesIgnore = true igenomes_ignore = true
igenomesIgnore = true //deprecated
max_memory = 256.GB max_memory = 256.GB
max_cpus = 28 max_cpus = 28
max_time = 24.h max_time = 24.h