From 1b30c5a4d24301ad1100e305f4ad1885b9f22b3f Mon Sep 17 00:00:00 2001
From: Remi Planel <rplanel@pasteur.fr>
Date: Wed, 24 Jul 2019 11:32:02 +0200
Subject: [PATCH] Add the Pasteur profile

---
 conf/pasteur.config | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)
 create mode 100644 conf/pasteur.config

diff --git a/conf/pasteur.config b/conf/pasteur.config
new file mode 100644
index 0000000..03971dc
--- /dev/null
+++ b/conf/pasteur.config
@@ -0,0 +1,24 @@
+//Profile config names for nf-core/configs
+params {
+  config_profile_description = 'The Institut Pasteur HPC cluster profile'
+  config_profile_contact = 'Remi Planel (@rplanel)'
+  config_profile_url = 'https://research.pasteur.fr/en/service/tars-cluster/'
+}
+
+singularity {
+  enabled = true
+  autoMounts = true
+  runOptions = '-B /local/scratch:/tmp'
+}
+
+process {
+  executor = 'slurm'
+  clusterOptions = { "-A $params.project ${params.clusterOptions ?: ''}" }
+}
+
+params {
+  igenomesIgnore = true
+  max_memory = 256.GB
+  max_cpus = 28
+  max_time = 24.h
+}