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Update eva.config

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James A. Fellows Yates 2022-03-15 07:49:06 +01:00 committed by GitHub
parent 1565b2ce63
commit 1b5037ce5e
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1 changed files with 4 additions and 4 deletions
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8
conf/pipeline/eager/eva.config
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@ -76,19 +76,19 @@ process {
} }
withName: bwa { withName: bwa {
clusterOptions = { "-S /bin/bash -V -l h_vmem=${task.memory.toGiga()}G,h=!(bionode01|bionode02|bionode03|bionode04|bionode05|bionode06)" } clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga())}G,h=!(bionode01|bionode02|bionode03|bionode04|bionode05|bionode06)" }
} }
withName: bwamem { withName: bwamem {
clusterOptions = { "-S /bin/bash -V -l h_vmem=${task.memory.toGiga()}G,h=!(bionode01|bionode02|bionode03|bionode04|bionode05|bionode06)" } clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga())}G,h=!(bionode01|bionode02|bionode03|bionode04|bionode05|bionode06)" }
} }
withName: circularmapper { withName: circularmapper {
clusterOptions = { "-S /bin/bash -V -l h_vmem=${task.memory.toGiga()}G,h=!(bionode01|bionode02|bionode03|bionode04|bionode05|bionode06)" } clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga())}G,h=!(bionode01|bionode02|bionode03|bionode04|bionode05|bionode06)" }
} }
withName: bowtie2 { withName: bowtie2 {
clusterOptions = { "-S /bin/bash -V -l h_vmem=${task.memory.toGiga()}G,h=!(bionode01|bionode02|bionode03|bionode04|bionode05|bionode06)" } clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga())}G,h=!(bionode01|bionode02|bionode03|bionode04|bionode05|bionode06)" }
} }
withName: samtools_flagstat { withName: samtools_flagstat {