From 1bf45362e5668008c4abf8488baa8ada559f4a2a Mon Sep 17 00:00:00 2001
From: drpatelh <drhpatel@gmail.com>
Date: Fri, 23 Nov 2018 16:33:22 +0000
Subject: [PATCH] Added custom profiles

---
 nfcore_custom.config | 34 ++++++++++++++++++++++++++++++++++
 1 file changed, 34 insertions(+)
 create mode 100644 nfcore_custom.config

diff --git a/nfcore_custom.config b/nfcore_custom.config
new file mode 100644
index 0000000..c8b7e6e
--- /dev/null
+++ b/nfcore_custom.config
@@ -0,0 +1,34 @@
+/*
+ * -------------------------------------------------
+ *  nfcore custom profile Nextflow config file
+ * -------------------------------------------------
+ * Config options for all custom environments.
+ * Cluster-specific config options should be saved
+ * in the conf folder and imported under a profile
+ * name here.
+ */
+
+config_base = "https://raw.githubusercontent.com/nf-core/configs/${params.custom_config_version}/conf"
+
+profiles {
+
+  binac { includeConfig "${config_base}/binac.config"
+    	  params.igenomesIgnore = true
+  }
+  ccga { includeConfig "${config_base}/ccga.config" }
+  cfc { includeConfig "${config_base}/cfc.config"
+        params.igenomesIgnore = true
+  }
+  crick { includeConfig "${config_base}/crick.config" }
+  gis { includeConfig "${config_base}/gis.config" }
+  hebbe { includeConfig "${config_base}/hebbe.config"
+    	  params.igenomesIgnore = true
+  }
+  uct_hex { includeConfig "${config_base}/uct_hex.config" }
+  uppmax_devel { includeConfig "${config_base}/uppmax.config"
+		 includeConfig "${config_base}/uppmax-devel.config"
+  }
+  uppmax { includeConfig "${config_base}/uppmax.config" }
+  uzh { includeConfig "${config_base}/uzh.config" }
+    
+}