diff --git a/conf/pipeline/eager/shh.config b/conf/pipeline/eager/shh.config index 3dd95ed..b333f09 100644 --- a/conf/pipeline/eager/shh.config +++ b/conf/pipeline/eager/shh.config @@ -4,14 +4,15 @@ params { // Specific nf-core/configs params config_profile_contact = 'James Fellows Yates (@jfy133)' config_profile_description = 'nf-core/eager SHH profile provided by nf-core/configs' + igenomes_base = "/projects1/public_data/igenomes/" } // Specific nf-core/eager process configuration process { - withName: malt { - memory = { check_max( 756.GB * task.attempt, 'memory' ) } - cpus = { check_max(64 * task.attempt, 'cpus') } + withName:malt { + memory = { 756.GB * task.attempt ] + cpus = { 64 * task.attempt } time = 1440.h - queue = { task.memory > 756.GB ? 'supercruncher': 'long' } + queue = { task.memory > 756.GB ? 'supercruncher' : 'long' } } } diff --git a/conf/shh.config b/conf/shh.config index 190caad..91ea734 100644 --- a/conf/shh.config +++ b/conf/shh.config @@ -29,7 +29,6 @@ params { igenomes_base = "/projects1/public_data/igenomes/" } - profiles { cdag { config_profile_description = 'MPI-SHH CDAG profile, provided by nf-core/configs.'