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Merge pull request #357 from mahesh-panchal/uppmax-hostname-fix

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Execute sinfo with bash shell
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Phil Ewels 2022-03-25 15:31:09 +01:00 committed by GitHub
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conf/uppmax.config
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@ -23,7 +23,7 @@ singularity {
def hostname = "r1" def hostname = "r1"
try { try {
hostname = "sinfo --local -N -h | grep -m 1 -F -v CLUSTER: | cut -f1 -d' ' ".execute().text.trim() hostname = ['/bin/bash', '-c', 'sinfo --local -N -h | grep -m 1 -F -v CLUSTER: | cut -f1 -d" "'].execute().text.trim()
} catch (java.io.IOException e) { } catch (java.io.IOException e) {
System.err.println("WARNING: Could not run sinfo to determine current cluster, defaulting to rackham") System.err.println("WARNING: Could not run sinfo to determine current cluster, defaulting to rackham")
} }