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Set BLASTDB_LMDB_MAP_SIZE

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This environment variable needs to be set in order to prevent memory allocation errors in the MAKEBLASTDB process.
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ameynert 2021-07-22 15:07:19 +01:00 committed by GitHub
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4
conf/pipeline/viralrecon/eddie.config
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@ -1,3 +1,7 @@
env {
BLASTDB_LMDB_MAP_SIZE=100000000
}
process {
withName : '.*PICARD.*' {
clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}