From 219244f1b49d645be8515ce9e940ab0107a3f1da Mon Sep 17 00:00:00 2001 From: Venkat Malladi Date: Thu, 18 Nov 2021 15:28:34 -0600 Subject: [PATCH] Add in sample datastorage for Illumina Platinum genomes. --- conf/azurebatch.config | 8 ++++---- docs/azurebatch.md | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/conf/azurebatch.config b/conf/azurebatch.config index ddc69d7..12c516b 100644 --- a/conf/azurebatch.config +++ b/conf/azurebatch.config @@ -4,11 +4,11 @@ params { config_profile_contact = 'Venkat Malladi (@vsmalladi)' config_profile_url = 'https://azure.microsoft.com/services/batch/' - az_location = 'westeurope' + az_location = 'westus2' batch_name = false batch_key = false - storage_name = 'nextflow-test' - storage_key = 'aepeL0FVpPKAM7i9F1F68p9n//0zi+xE1vNStbHD3sVJjqfGqtDd007UxaTUaCqaClHLWEj8JG2HV0AnTLVDaA==' + storage_name = 'datasetplatinumgenomes' + sas_token = 'sv=2019-02-02&se=2050-01-01T08%3A00%3A00Z&si=prod&sr=c&sig=FFfZ0QaDcnEPQmWsshtpoYOjbzd4jtwIWeK%2Fc4i9MqM%3D' } docker { @@ -21,6 +21,6 @@ azure.batch.accountName = params.batch_name azure.batch.accountKey = params.batch_key azure.batch.autoPoolMode = true azure.storage.accountName = params.storage_name -azure.storage.accountKey = params.storage_key +azure.storage.sasToken = params.sas_token workDir = 'az://work' process.executor = 'azurebatch' diff --git a/docs/azurebatch.md b/docs/azurebatch.md index a9222b9..7992fb9 100644 --- a/docs/azurebatch.md +++ b/docs/azurebatch.md @@ -1,7 +1,7 @@ # nf-core/configs: azurebatch Configuration To be used with the `azurebatch` profile by specifying the `-profile azurebatch` when running nf-core pipelines. -Custom queue and storage need to be supplied with `params.az_location`, `params.batch_name`, `params.batch_key`, `params.storage_name`, `params.storage_key`. +Custom queue and storage need to be supplied with `params.az_location`, `params.batch_name`, `params.batch_key`, `params.storage_name`, `params.sas_token`. ## Azure Batch Setup