diff --git a/conf/pipeline/rnaseq/utd_sysbio.config b/conf/pipeline/rnaseq/utd_sysbio.config index 5e4c492..0c9dd7d 100644 --- a/conf/pipeline/rnaseq/utd_sysbio.config +++ b/conf/pipeline/rnaseq/utd_sysbio.config @@ -2,7 +2,6 @@ params { config_profile_description = 'University of Texas at Dallas HPC cluster profile provided by nf-core/configs' config_profile_contact = 'Edmund Miller(@emiller88)' config_profile_url = 'http://docs.oithpc.utdallas.edu/' - singularity_cache_dir = '/scratch/applied-genomics/singularity' } process { diff --git a/docs/pipeline/rnaseq/utd_sysbio.md b/docs/pipeline/rnaseq/utd_sysbio.md new file mode 100644 index 0000000..ff228d5 --- /dev/null +++ b/docs/pipeline/rnaseq/utd_sysbio.md @@ -0,0 +1,23 @@ +# nf-core/configs: UTD sysbio rnaseq specific configuration + +Extra specific configuration for rnaseq pipeline + +## Usage + +To use, run the pipeline with `-profile sysbio`. + +This will download and launch the eager specific [`utd_sysbio.config`](../../../conf/pipeline/rnaseq/utd_sysbio.config) which has been pre-configured with a setup suitable for the shh cluster. + +Example: `nextflow run nf-core/rnaseq -profile sysbio` + +## rnaseq specific configurations for UTD sysbio + +Specific configurations for UTD Sysbio has been made for rnaseq. + +### General profiles + + + +### Contextual profiles + +