From 21e1037e0c61a376edfe0e8f2778808b89fa6be2 Mon Sep 17 00:00:00 2001
From: Edmund Miller <edmund.a.miller@protonmail.com>
Date: Thu, 17 Jun 2021 08:36:24 -0500
Subject: [PATCH] docs(sysbio): Add rnaseq specific docs

---
 conf/pipeline/rnaseq/utd_sysbio.config |  1 -
 docs/pipeline/rnaseq/utd_sysbio.md     | 23 +++++++++++++++++++++++
 2 files changed, 23 insertions(+), 1 deletion(-)
 create mode 100644 docs/pipeline/rnaseq/utd_sysbio.md

diff --git a/conf/pipeline/rnaseq/utd_sysbio.config b/conf/pipeline/rnaseq/utd_sysbio.config
index 5e4c492..0c9dd7d 100644
--- a/conf/pipeline/rnaseq/utd_sysbio.config
+++ b/conf/pipeline/rnaseq/utd_sysbio.config
@@ -2,7 +2,6 @@ params {
   config_profile_description = 'University of Texas at Dallas HPC cluster profile provided by nf-core/configs'
   config_profile_contact = 'Edmund Miller(@emiller88)'
   config_profile_url = 'http://docs.oithpc.utdallas.edu/'
-  singularity_cache_dir = '/scratch/applied-genomics/singularity'
 }
 
 process {
diff --git a/docs/pipeline/rnaseq/utd_sysbio.md b/docs/pipeline/rnaseq/utd_sysbio.md
new file mode 100644
index 0000000..ff228d5
--- /dev/null
+++ b/docs/pipeline/rnaseq/utd_sysbio.md
@@ -0,0 +1,23 @@
+# nf-core/configs: UTD sysbio rnaseq specific configuration
+
+Extra specific configuration for rnaseq pipeline
+
+## Usage
+
+To use, run the pipeline with `-profile sysbio`.
+
+This will download and launch the eager specific [`utd_sysbio.config`](../../../conf/pipeline/rnaseq/utd_sysbio.config) which has been pre-configured with a setup suitable for the shh cluster.
+
+Example: `nextflow run nf-core/rnaseq -profile sysbio`
+
+## rnaseq specific configurations for UTD sysbio
+
+Specific configurations for UTD Sysbio has been made for rnaseq.
+
+### General profiles
+
+<!-- TODO -->
+
+### Contextual profiles
+
+<!-- TODO -->