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Had executor options in wrong spot :(

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This commit is contained in:
Rogan Grant 2021-07-28 18:05:45 -05:00
parent 6862fb8bfd
commit 24a2949fe2
1 changed files with 2 additions and 3 deletions
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5
conf/nu_genomics.config
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@ -13,9 +13,6 @@ params
singularity
{
enabled = true
//queue = {task.memory >= 190.GB ? 'genomics-himem' : task.time >= 48.h ? 'genomicslong' : 'genomics'}
queue = 'genomics'
clusterOptions = '-A b1042'
cacheDir = "/projects/b1042/singularity_cache"
}
@ -23,6 +20,8 @@ process
{
beforeScript = 'module purge; module load singularity/latest; module load graphviz/2.40.1'
executor = 'slurm'
queue = {task.memory >= 190.GB ? 'genomics-himem' : task.time >= 48.h ? 'genomicslong' : 'genomics'}
clusterOptions = '-A b1042'
}
executor