From 250035e71d0655c87f02a10749738505acd1c847 Mon Sep 17 00:00:00 2001 From: MaxUlysse Date: Wed, 11 Mar 2020 14:11:23 +0100 Subject: [PATCH] fix path to config files --- docs/pipeline/ampliseq/binac.md | 2 +- docs/pipeline/eager/shh.md | 2 +- docs/pipeline/sarek/munin.md | 2 +- docs/pipeline/sarek/uppmax.md | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/docs/pipeline/ampliseq/binac.md b/docs/pipeline/ampliseq/binac.md index a63e021..fb3403e 100644 --- a/docs/pipeline/ampliseq/binac.md +++ b/docs/pipeline/ampliseq/binac.md @@ -6,7 +6,7 @@ Extra specific configuration for the ampliseq pipeline. To use, run the pipeline with `-profile binac`. -This will download and launch the ampliseq specific [`binac.config`](../conf/pipeline/ampliseq/binac.config) which has been pre-configured with a setup suitable for the BINAC cluster. +This will download and launch the ampliseq specific [`binac.config`](../../../conf/pipeline/ampliseq/binac.config) which has been pre-configured with a setup suitable for the BINAC cluster. Example: `nextflow run nf-core/ampliseq -profile binac` diff --git a/docs/pipeline/eager/shh.md b/docs/pipeline/eager/shh.md index a0dc092..b77ede4 100644 --- a/docs/pipeline/eager/shh.md +++ b/docs/pipeline/eager/shh.md @@ -6,7 +6,7 @@ Extra specific configuration for eager pipeline To use, run the pipeline with `-profile shh`. -This will download and launch the eager specific [`shh.config`](../conf/pipeline/eager/shh.config) which has been pre-configured with a setup suitable for the shh cluster. +This will download and launch the eager specific [`shh.config`](../../../conf/pipeline/eager/shh.config) which has been pre-configured with a setup suitable for the shh cluster. Example: `nextflow run nf-core/eager -profile shh` diff --git a/docs/pipeline/sarek/munin.md b/docs/pipeline/sarek/munin.md index ce411c1..fc1636f 100644 --- a/docs/pipeline/sarek/munin.md +++ b/docs/pipeline/sarek/munin.md @@ -6,7 +6,7 @@ Extra specific configuration for sarek pipeline To use, run the pipeline with `-profile munin`. -This will download and launch the sarek specific [`munin.config`](../conf/pipeline/sarek/munin.config) which has been pre-configured with a setup suitable for the MUNIN cluster. +This will download and launch the sarek specific [`munin.config`](../../../conf/pipeline/sarek/munin.config) which has been pre-configured with a setup suitable for the MUNIN cluster. Example: `nextflow run nf-core/sarek -profile munin` diff --git a/docs/pipeline/sarek/uppmax.md b/docs/pipeline/sarek/uppmax.md index ab8d85e..e612a41 100644 --- a/docs/pipeline/sarek/uppmax.md +++ b/docs/pipeline/sarek/uppmax.md @@ -6,7 +6,7 @@ Extra specific configuration for sarek pipeline To use, run the pipeline with `-profile uppmax`. -This will download and launch the sarek specific [`uppmax.config`](../conf/pipeline/sarek/uppmax.config) which has been pre-configured with a setup suitable for uppmax clusters. +This will download and launch the sarek specific [`uppmax.config`](../../../conf/pipeline/sarek/uppmax.config) which has been pre-configured with a setup suitable for uppmax clusters. Example: `nextflow run nf-core/sarek -profile uppmax`