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modified mpcdf configs (general + eager)

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ilight1542 2022-03-03 13:55:02 +01:00
parent 341ea3664e
commit 25c644abb7
2 changed files with 57 additions and 2 deletions
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4
conf/mpcdf.config
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@ -47,7 +47,7 @@ profiles {
} }
executor { executor {
queueSize = 8 queueSize = 72
pollInterval = '1 min' pollInterval = '1 min'
queueStatInterval = '5 min' queueStatInterval = '5 min'
} }
@ -61,7 +61,7 @@ profiles {
params { params {
config_profile_description = 'MPCDF raven profile (unofficially) provided by nf-core/configs.' config_profile_description = 'MPCDF raven profile (unofficially) provided by nf-core/configs.'
max_memory = 368.GB max_memory = 2048.GB
max_cpus = 72 max_cpus = 72
max_time = 24.h max_time = 24.h
} }

55
conf/pipeline/eager/mpcdf.config
View file

@ -61,4 +61,59 @@ process {
} }
} }
} }
raven {
// Specific nf-core/eager process configuration
process {
withName: malt {
maxRetries = 1
memory = 2048.GB
cpus = 72
time = 24.h
}
withLabel:'sc_tiny'{
cpus = { check_max( 1, 'cpus' ) }
memory = { check_max( 1.GB * task.attempt, 'memory' ) }
time = 24.h
}
withLabel:'sc_small'{
cpus = { check_max( 1, 'cpus' ) }
memory = { check_max( 4.GB * task.attempt, 'memory' ) }
time = 24.h
}
withLabel:'sc_medium'{
cpus = { check_max( 1, 'cpus' ) }
memory = { check_max( 8.GB * task.attempt, 'memory' ) }
time = 24.h
}
withLabel:'mc_small'{
cpus = { check_max( 2 * task.attempt, 'cpus' ) }
memory = { check_max( 4.GB * task.attempt, 'memory' ) }
time = 24.h
}
withLabel:'mc_medium' {
cpus = { check_max( 4 * task.attempt, 'cpus' ) }
memory = { check_max( 8.GB * task.attempt, 'memory' ) }
time = 24.h
}
withLabel:'mc_large'{
cpus = { check_max( 8 * task.attempt, 'cpus' ) }
memory = { check_max( 16.GB * task.attempt, 'memory' ) }
time = 24.h
}
withLabel:'mc_huge'{
cpus = { check_max( 72, 'cpus' ) }
memory = { check_max( 240.GB * task.attempt, 'memory' ) }
time = 24.h
}
}
}
} }