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Merge pull request #124 from nf-core/Update-sarek-specific-UPPMAX-config

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Update sarek specific UPPMAX config
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Johannes Alneberg 2020-02-28 07:38:34 +01:00 committed by GitHub
commit 263230fdde
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1 changed files with 8 additions and 3 deletions
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11
conf/pipeline/sarek/uppmax.config
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@ -3,10 +3,15 @@
params { params {
config_profile_contact = 'Maxime Garcia (@MaxUlysse)' config_profile_contact = 'Maxime Garcia (@MaxUlysse)'
config_profile_description = 'nf-core/sarek uppmax profile provided by nf-core/configs' config_profile_description = 'nf-core/sarek uppmax profile provided by nf-core/configs'
}
params { singleCPUmem = 7000.MB
// Just useful until iGenomes is updated on UPPMAX // Just useful until iGenomes is updated on UPPMAX
igenomeIgnore = true igenomeIgnore = true
genomes_base = params.genome == 'GRCh37' ? '/sw/data/uppnex/ToolBox/ReferenceAssemblies/hg38make/bundle/2.8/b37' : '/sw/data/uppnex/ToolBox/hg38bundle' genomes_base = params.genome == 'GRCh37' ? '/sw/data/uppnex/ToolBox/ReferenceAssemblies/hg38make/bundle/2.8/b37' : '/sw/data/uppnex/ToolBox/hg38bundle'
} }
if (hostname ==~ "r.*") {
params.singleCPUmem = 6400.MB
}
if (hostname ==~ "i.*") {
params.singleCPUmem = 15.GB
}