millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-22 00:26:03 +00:00
Code Issues Releases Packages Activity

Apply suggestions from code review

Browse source 
replace `nf-tools` by `nf-core`

Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
This commit is contained in:
Adrien Coulier 2022-10-10 16:21:47 +02:00 committed by GitHub
parent ec8d67285a
commit 278ae391a0
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 2 additions and 2 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

4
docs/uppmax.md
View file

@ -8,7 +8,7 @@ We have a Slack channel dedicated to UPPMAX users on the nf-core Slack: [https:/
## Using the UPPMAX config profile ## Using the UPPMAX config profile
The recommended way to activate `Nextflow`, `nf-tools`, and any pipeline The recommended way to activate `Nextflow`, `nf-core`, and any pipeline
available in `nf-core` on UPPMAX is to use the [module system](https://www.uppmax.uu.se/resources/software/module-system/): available in `nf-core` on UPPMAX is to use the [module system](https://www.uppmax.uu.se/resources/software/module-system/):
```bash ```bash
@ -103,7 +103,7 @@ Before running a nf-core pipeline on `bianca` you will first have to download th
In this guide, we use `rackham` to download and transfer files to the `wharf` area, but it can also be done on your own computer. In this guide, we use `rackham` to download and transfer files to the `wharf` area, but it can also be done on your own computer.
If you use `rackham` to download the pipeline and the singularity containers, we recommend using an interactive session (cf [interactive guide](https://www.uppmax.uu.se/support/faq/running-jobs-faq/how-can-i-run-interactively-on-a-compute-node/)), which is what we do in the following guide. If you use `rackham` to download the pipeline and the singularity containers, we recommend using an interactive session (cf [interactive guide](https://www.uppmax.uu.se/support/faq/running-jobs-faq/how-can-i-run-interactively-on-a-compute-node/)), which is what we do in the following guide.
It is recommended to activate `Nextflow`, `nf-tools` and your `nf-core` It is recommended to activate `Nextflow`, `nf-core` and your `nf-core`
pipeline through the module system (see **Using the UPPMAX config profile** pipeline through the module system (see **Using the UPPMAX config profile**
above). In case you need a specific version of any of these tools you can above). In case you need a specific version of any of these tools you can
follow the guide below. follow the guide below.