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conda env setup improvement

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Cedric 2022-10-02 19:15:59 -10:00 committed by GitHub
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docs/mana.md
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@ -29,10 +29,10 @@ To setup nextflow on your account, follow these steps.
```bash ```bash
# Load the latest anaconda3 module # Load the latest anaconda3 module
module load lang/Anaconda3 module load lang/Anaconda3/2022.05
# Initialize environment # Initialize environment
. /opt/apps/software/lang/Anaconda3/5.1.0/etc/profile.d/conda.sh . $(conda info --base)/etc/profile.d/conda.sh
# Install nextflow (here in base environment, but you can create a new one if you'd like) # Install nextflow (here in base environment, but you can create a new one if you'd like)
conda install -c bioconda nextflow conda install -c bioconda nextflow
@ -41,6 +41,6 @@ conda install -c bioconda nextflow
If you want these settings to be persistent, you can add the first 2 commands in your .bash_profile file like this: If you want these settings to be persistent, you can add the first 2 commands in your .bash_profile file like this:
```bash ```bash
echo "module load lang/Anaconda3" >> ~/.bash_profile echo "module load lang/Anaconda3/2022.05" >> ~/.bash_profile
echo ". /opt/apps/software/lang/Anaconda3/5.1.0/etc/profile.d/conda.sh >> ~/.bash_profile" echo "$(conda info --base)/etc/profile.d/conda.sh" >> ~/.bash_profile
``` ```