millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-22 00:26:03 +00:00
Code Issues Releases Packages Activity

update shh config after CDAG departure

Browse source
This commit is contained in:
maxibor 2021-02-17 10:22:05 +01:00
parent d457699de1
commit 286e18b80c
1 changed files with 8 additions and 27 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

35
conf/shh.config
View file

@ -1,10 +1,10 @@
//Profile config names for nf-core/configs
params {
config_profile_description = 'Generic MPI-SHH cluster(s) profile provided by nf-core/configs.'
config_profile_description = 'Generic MPI-SHH SDAG cluster profile provided by nf-core/configs.'
config_profile_contact = 'James Fellows Yates (@jfy133), Maxime Borry (@Maxibor)'
config_profile_url = 'https://shh.mpg.de'
max_memory = 256.GB
max_cpus = 32
max_memory = 2.TB
max_cpus = 128
max_time = 720.h
//Illumina iGenomes reference file path
igenomes_base = "/projects1/public_data/igenomes/"
@ -13,14 +13,9 @@ params {
// Preform work directory cleanup after a successful run
cleanup = true
singularity {
enabled = true
autoMounts = true
cacheDir = "/projects1/singularity_scratch/cache/"
}
process {
executor = 'slurm'
queue = { task.memory > 756.GB || task.cpus > 64 ? 'supercruncher': task.time <= 2.h ? 'short' : task.time <= 48.h ? 'medium': 'long' }
}
executor {
@ -28,24 +23,10 @@ executor {
}
profiles {
cdag {
params {
config_profile_description = 'CDAG MPI-SHH profile, provided by nf-core/configs.'
}
// delete when CDAG will be fixed
process {
queue = 'long'
}
}
sdag {
params {
config_profile_description = 'SDAG MPI-SHH profile, provided by nf-core/configs.'
max_memory = 2.TB
max_cpus = 128
}
process {
queue = { task.memory > 756.GB || task.cpus > 64 ? 'supercruncher': task.time <= 2.h ? 'short' : task.time <= 48.h ? 'medium': 'long' }
}
singularity {
singularity.enabled = true
singularity.autoMounts = true
singularity.cacheDir = "/projects1/singularity_scratch/cache/"
}
// Profile to deactivate automatic cleanup of work directory after a successful run. Overwrites cleanup option.
debug {