From 5e54912ada55fa05cdca645584a185ed465c6389 Mon Sep 17 00:00:00 2001
From: maxibor <maxime.borry@gmail.com>
Date: Fri, 25 Oct 2019 14:08:02 +0200
Subject: [PATCH 1/2] add queue choice

---
 conf/shh.config | 9 ++++++++-
 1 file changed, 8 insertions(+), 1 deletion(-)

diff --git a/conf/shh.config b/conf/shh.config
index 5cb3396..c23d331 100644
--- a/conf/shh.config
+++ b/conf/shh.config
@@ -14,7 +14,14 @@ singularity {
 
 process {
     executor = 'slurm'
-    queue = 'short'
+    switch(task.time){
+      case {it < 2.h}:
+        queue = 'short'
+      case {it > 2.h && it < 48.h}:
+        queue = 'medium'
+      case {it > 48.h}:
+        queue = 'long'
+    }
 }
 
 executor {

From 7a2fe44b43861a89755972048dd944cdacf28484 Mon Sep 17 00:00:00 2001
From: Maxime Borry <borry@mpi-sdag1.sdag.ppj.shh.mpg.de>
Date: Fri, 25 Oct 2019 15:50:49 +0200
Subject: [PATCH 2/2] resource based queuing

---
 conf/shh.config | 13 +++----------
 1 file changed, 3 insertions(+), 10 deletions(-)

diff --git a/conf/shh.config b/conf/shh.config
index c23d331..14da627 100644
--- a/conf/shh.config
+++ b/conf/shh.config
@@ -14,14 +14,7 @@ singularity {
 
 process {
     executor = 'slurm'
-    switch(task.time){
-      case {it < 2.h}:
-        queue = 'short'
-      case {it > 2.h && it < 48.h}:
-        queue = 'medium'
-      case {it > 48.h}:
-        queue = 'long'
-    }
+    queue = { task.memory > 756.GB ? 'supercruncher': task.time <= 2.h ? 'short' : task.time <= 48.h ? 'medium': 'long' }
 }
 
 executor {
@@ -29,9 +22,9 @@ executor {
 }
 
 params {
-  max_memory = 256.GB
+  max_memory = 2.TB
   max_cpus = 32
-  max_time = 2.h
+  max_time = 720.h
   //Illumina iGenomes reference file path
   igenomes_base = "/projects1/public_data/igenomes/"
 }
\ No newline at end of file