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docs/adcra.md

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 # nf-core/configs: CRA HPC Configuration
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 nfcore pipeline sarek and rnaseq have been tested on the CRA HPC.
 
 ## Before running the pipeline
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 - You will need an account to use the CRA HPC cluster in order to run the pipeline.
 - Make sure that Singularity and Nextflow are installed.
 - Downlode pipeline singularity images to a HPC system using [nf-core tools](https://nf-co.re/tools/#downloading-pipelines-for-offline-use)
+
 ```
 $ conda install nf-core
 $ nf-core download
 ```
-- You will need to specify a Singularity cache directory in your ~./bashrc. This will store your container images in this cache directory without repeatedly downloading them every time you run a pipeline. Since space on home directory is limited, using lustre file system is recommended. 
+
+- You will need to specify a Singularity cache directory in your ~./bashrc. This will store your container images in this cache directory without repeatedly downloading them every time you run a pipeline. Since space on home directory is limited, using lustre file system is recommended.
+
 ```
 export NXF_SINGULARITY_CACHEDIR = "/lustre/fs0/storage/yourCRAAccount/cache_dir"
 ```
+
 - Download iGenome reference to be used as a local copy.
+
 ```
 $ aws s3 --no-sign-request --region eu-west-1 sync s3://ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/ /lustre/fs0/storage/yourCRAAccount/references/Homo_sapiens/GATK/GRCh38/
 ```
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 ## Running the pipeline using the adcra config profile
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 - Run the pipeline within a [screen](https://linuxize.com/post/how-to-use-linux-screen/) or [tmux](https://linuxize.com/post/getting-started-with-tmux/) session.
-- Specify the config profile with ```-profile adcra```.
-- Using lustre file systems to store results (```--outdir```) and intermediate files (```-work-dir```) is recommended.
+- Specify the config profile with `-profile adcra`.
+- Using lustre file systems to store results (`--outdir`) and intermediate files (`-work-dir`) is recommended.
+
 ```
 nextflow run /path/to/nf-core/<pipeline-name> -profile adcra \
 --genome GRCh38 \