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Update computerome.config
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1 changed files with 3 additions and 3 deletions
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@ -13,7 +13,7 @@ params {
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//There is no max walltime on the cluster, but a week seems sensible if not directly specified
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max_time = 168.h
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}
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params.cache_dir = { "/home/projects/$params.project/scratch" }
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params.cache_dir = "/home/projects/$params.project/scratch"
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singularity {
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enabled = true
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@ -22,8 +22,8 @@ singularity {
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}
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process {
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beforeScript = { "module load tools singularity/3.8.0; export _JAVA_OPTIONS=-Djava.io.tmpdir=$params.cache_dir; export NXF_SINGULARITY_CACHEDIR=$params.cache_dir" }
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beforeScript = "module load tools singularity/3.8.0; export _JAVA_OPTIONS=-Djava.io.tmpdir=$params.cache_dir"
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executor = 'pbs'
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queueSize = 2000
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clusterOptions = { "-A $params.project -W group_list=$params.project" }
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clusterOptions = "-A $params.project -W group_list=$params.project"
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}
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