millironx/nf-configs
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Update computerome.config

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Marc Trunjer Kusk Nielsen 2021-09-15 10:22:57 +02:00 committed by GitHub
parent 86e21b378a
commit 29003e13f1
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1 changed files with 3 additions and 3 deletions
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conf/computerome.config
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@ -13,7 +13,7 @@ params {
//There is no max walltime on the cluster, but a week seems sensible if not directly specified
max_time = 168.h
}
params.cache_dir = { "/home/projects/$params.project/scratch" }
params.cache_dir = "/home/projects/$params.project/scratch"
singularity {
enabled = true
@ -22,8 +22,8 @@ singularity {
}
process {
beforeScript = { "module load tools singularity/3.8.0; export _JAVA_OPTIONS=-Djava.io.tmpdir=$params.cache_dir; export NXF_SINGULARITY_CACHEDIR=$params.cache_dir" }
beforeScript = "module load tools singularity/3.8.0; export _JAVA_OPTIONS=-Djava.io.tmpdir=$params.cache_dir"
executor = 'pbs'
queueSize = 2000
clusterOptions = { "-A $params.project -W group_list=$params.project" }
clusterOptions = "-A $params.project -W group_list=$params.project"
}