diff --git a/conf/utd_sysbio.config b/conf/utd_sysbio.config new file mode 100644 index 0000000..654ac09 --- /dev/null +++ b/conf/utd_sysbio.config @@ -0,0 +1,38 @@ +//Profile config names for nf-core/configs +params { + config_profile_description = 'University of Texas at Dallas HPC cluster profile provided by nf-core/configs' + config_profile_contact = 'Edmund Miller(@emiller88)' + config_profile_url = 'http://docs.oithpc.utdallas.edu/' + singularity_cache_dir = '/scratch/applied-genomics/singularity' +} + +env { + TMPDIR = '/home/$USER/scratch/tmp' +} + +singularity { + enabled = true + envWhitelist='SINGULARITY_BINDPATH' + autoMounts = true + cacheDir = params.singularity_cache_dir +} + +process { + beforeScript = 'module load singularity/3.4.1' + executor = 'slurm' + queue = { task.memory >= 30.GB && task.cpu <= 16 ? 'normal': 'smallmem' } + + + withLabel:process_high { + cpus = { check_max( 16 * task.attempt, 'cpus' ) } + memory = { check_max( 62.GB * task.attempt, 'memory' ) } + time = { check_max( 16.h * task.attempt, 'time' ) } + } +} + +params { + igenomes_base = '/scratch/applied-genomics/references/iGenomes/references/' + max_memory = 90.GB + max_cpus = 16 + max_time = 96.h +} \ No newline at end of file