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Add in both uppmax profiles

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This commit is contained in:
Alexander Peltzer 2019-01-04 16:33:54 +01:00
parent 6f7a3cc422
commit 2b814041ee
2 changed files with 20 additions and 8 deletions
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15
conf/uppmax-devel.config
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@ -1,13 +1,20 @@
/*
* -------------------------------------------------
* Nextflow config file for UPPMAX (rackham / irma)
* -------------------------------------------------
//Profile config names for nf-core/configs
params {
config_profile_name = 'UPPMAX-DEVEL'
config_profile_description = 'UPPMAX Development Cluster Profile provided by nf-core/configs.'
config_profile_contact = 'Phil Ewels (@ewels)'
config_profile_url = 'https://www.uppmax.uu.se/'
}
/* Additional description:
* To be applied after main UPPMAX config, overwrites config and
* submits jobs to the `devcore` queue, which has much faster
* queue times. All jobs are limited to 1 hour to be eligible
* for this queue and only one job allowed at a time.
*/
executor {
name = 'slurm'
queueSize = 1

13
conf/uppmax.config
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@ -1,7 +1,12 @@
/*
* -------------------------------------------------
* Nextflow config file for UPPMAX (rackham / irma)
* -------------------------------------------------
//Profile config names for nf-core/configs
params {
config_profile_name = 'UPPMAX'
config_profile_description = 'UPPMAX Cluster Profile provided by nf-core/configs.'
config_profile_contact = 'Phil Ewels (@ewels)'
config_profile_url = 'https://www.uppmax.uu.se/'
}
/* Additional description:
* Defines reference genomes, using iGenome paths
* Imported under the default 'standard' Nextflow
* profile in nextflow.config