diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index 0cdf350..c5e6a57 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -18,12 +18,13 @@ jobs: matrix: profile: - 'abims' - - 'awsbatch' - 'aws_tower' + - 'awsbatch' - 'bi' - 'bigpurple' - 'binac' - 'biohpc_gen' + - 'cambridge' - 'cbe' - 'ccga_dx' - 'ccga_med' diff --git a/nfcore_custom.config b/nfcore_custom.config index e19376a..74d25b9 100644 --- a/nfcore_custom.config +++ b/nfcore_custom.config @@ -11,12 +11,13 @@ //Please use a new line per include Config section to allow easier linting/parsing. Thank you. profiles { abims { includeConfig "${params.custom_config_base}/conf/abims.config" } - awsbatch { includeConfig "${params.custom_config_base}/conf/awsbatch.config" } aws_tower { includeConfig "${params.custom_config_base}/conf/aws_tower.config" } + awsbatch { includeConfig "${params.custom_config_base}/conf/awsbatch.config" } bi { includeConfig "${params.custom_config_base}/conf/bi.config" } bigpurple { includeConfig "${params.custom_config_base}/conf/bigpurple.config" } binac { includeConfig "${params.custom_config_base}/conf/binac.config" } biohpc_gen { includeConfig "${params.custom_config_base}/conf/biohpc_gen.config" } + cambridge { includeConfig "${params.custom_config_base}/conf/cambridge.config" } cbe { includeConfig "${params.custom_config_base}/conf/cbe.config" } ccga_dx { includeConfig "${params.custom_config_base}/conf/ccga_dx.config" } ccga_med { includeConfig "${params.custom_config_base}/conf/ccga_med.config" } @@ -24,20 +25,21 @@ profiles { cfc_dev { includeConfig "${params.custom_config_base}/conf/cfc_dev.config" } crick { includeConfig "${params.custom_config_base}/conf/crick.config" } czbiohub_aws { includeConfig "${params.custom_config_base}/conf/czbiohub_aws.config" } + denbi_qbic { includeConfig "${params.custom_config_base}/conf/denbi_qbic.config" } ebc { includeConfig "${params.custom_config_base}/conf/ebc.config" } eddie { includeConfig "${params.custom_config_base}/conf/eddie.config" } eva { includeConfig "${params.custom_config_base}/conf/eva.config" } + genotoul { includeConfig "${params.custom_config_base}/conf/genotoul.config" } + genouest { includeConfig "${params.custom_config_base}/conf/genouest.config" } + gis { includeConfig "${params.custom_config_base}/conf/gis.config" } + google { includeConfig "${params.custom_config_base}/conf/google.config" } + hebbe { includeConfig "${params.custom_config_base}/conf/hebbe.config" } icr_davros { includeConfig "${params.custom_config_base}/conf/icr_davros.config" } ifb_core { includeConfig "${params.custom_config_base}/conf/ifb_core.config" } imperial { includeConfig "${params.custom_config_base}/conf/imperial.config" } - imperial_mb { includeConfig "${params.custom_config_base}/conf/imperial_mb.config" } - genotoul { includeConfig "${params.custom_config_base}/conf/genotoul.config" } - google { includeConfig "${params.custom_config_base}/conf/google.config" } - denbi_qbic { includeConfig "${params.custom_config_base}/conf/denbi_qbic.config" } - genouest { includeConfig "${params.custom_config_base}/conf/genouest.config" } - gis { includeConfig "${params.custom_config_base}/conf/gis.config" } - hebbe { includeConfig "${params.custom_config_base}/conf/hebbe.config" } - lugh { includeConfig "${params.custom_config_base}/conf/lugh.config"} + imperial_mb { includeConfig "${params.custom_config_base}/conf/imperial_mb.config" } + jax { includeConfig "${params.custom_config_base}/conf/jax.config" } + lugh { includeConfig "${params.custom_config_base}/conf/lugh.config" } mpcdf { includeConfig "${params.custom_config_base}/conf/mpcdf.config" } munin { includeConfig "${params.custom_config_base}/conf/munin.config" } oist { includeConfig "${params.custom_config_base}/conf/oist.config" } @@ -52,7 +54,6 @@ profiles { utd_ganymede { includeConfig "${params.custom_config_base}/conf/utd_ganymede.config" } utd_sysbio { includeConfig "${params.custom_config_base}/conf/utd_sysbio.config" } uzh { includeConfig "${params.custom_config_base}/conf/uzh.config" } - jax { includeConfig "${params.custom_config_base}/conf/jax.config" } } // If user hostnames contain one of these substring and they are @@ -65,11 +66,11 @@ params { cbe: ['.cbe.vbc.ac.at'], cfc: ['.hpc.uni-tuebingen.de'], crick: ['.thecrick.org'], + genotoul: ['.genologin1.toulouse.inra.fr', '.genologin2.toulouse.inra.fr'], + genouest: ['.genouest.org'], icr_davros: ['.davros.compute.estate'], imperial: ['.hpc.ic.ac.uk'], imperial_mb: ['.hpc.ic.ac.uk'], - genotoul: ['.genologin1.toulouse.inra.fr', '.genologin2.toulouse.inra.fr'], - genouest: ['.genouest.org'], uppmax: ['.uppmax.uu.se'], utd_ganymede: ['ganymede.utdallas.edu'], utd_sysbio: ['sysbio.utdallas.edu']